Welcome to the UEA sRNA toolkit
This site provides access to our software tools for the analysis
of high-throughput small RNA data. This is the animal-specific version of the site. We also provide a version for plant datasets.
We will continue to add more tools and features to this site and we welcome your feedback to improve the tools.
We recently published a review on RNA silencing in plants, which discusses the computational analysis of large-scale sRNA datasets (link to article).
Tools available:
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Sequence file pre-processing: Sequence adaptor removal and conversion to FASTA format |
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Filter tool: Filter sequences in large-scale data sets |
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miRProf: Expression profiles of known miRNAs from large scale sRNA data sets |
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miRCat: Identification of miRNA sequences in large-scale sRNA data sets |
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FiRePat: identify regulatory patterns from gene and sRNA expression data |
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SiLoCo: Identification and comparison of sRNA-producing loci in large-scale data sets |
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SiLoMa: Generate graphical maps of individual sRNA loci. |
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RNA folding/annotation: For highlighting sRNA locations on a folded RNA sequence. |